Bioconductor Fold Change

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R deseq2 edger differential gene expression fold change

updated 2.9 years ago by ATpoint ★ 4.8k • written 6.7 years ago by Beginner ▴ 60

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diffBind Fold Change

updated 3.9 years ago by Joe Nicholas • 0 • written 6.2 years ago by joseluis.ruiz • 0

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1.7k

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edger differential expression genes fold change

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by ilovesuperheroes1993 • 0

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1.2k

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mfuzz fold change log2 STANDARDISATION

6.8 years ago prakashpandey1111 • 0

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ballgown stattest fold change

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by Arindam ▴ 80

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logfc limma fold change

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by Claudia ▴ 10

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2.9k

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edgeR DE analysis fold change cpm

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by Sara ▴ 20

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Comment: single-cells RNA-seq analysis by MAST with unbalanced group size by achoppe ▴ 10

Hello! I also have compared uneven groups of cells - 517 cells in one group and 26 in the other. I am wondering if you know any published …

Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0

Thanks, I figured it out.

Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati by Mei • 0

I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…

Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0

Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

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A: single-cells RNA-seq analysis by MAST with unbalanced group size

Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

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