Showing : Fold Change • reset
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R deseq2 edger differential gene expression fold change
updated 3.6 years ago by ★ 5.0k • written 7.5 years ago by ▴ 60
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diffBind report Fold scale
diffBind Fold Change
updated 4.6 years ago by • 0 • written 6.9 years ago by • 0
2
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4
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Majority upregulated genes in edgeR
edger differential expression genes fold change
updated 6.5 years ago by ★ 29k • written 6.5 years ago by • 0
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PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
7.5 years ago prakashpandey1111 • 0
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What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown stattest fold change
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 80
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Question on fold change calculation for microarray data
logfc limma fold change
updated 9.3 years ago by 53k • written 9.3 years ago by ▴ 10
2
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About differentially expressed genes that found by edgeR
edgeR DE analysis fold change cpm
updated 9.4 years ago by ★ 7.9k • written 9.4 years ago by ▴ 20
7 results • Page 1 of 1
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Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long? by ATpoint ★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
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Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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